Index

A

all_lineage_prevalences() (in module outbreak_data)

authenticate_new_user() (in module authenticate_user)

C

cases_by_location() (in module outbreak_data) cluster_df() (in module outbreak_tools)

cluster_lineages() (in module outbreak_clustering) const_idx() (in module outbreak_tools)

D

daily_lag() (in module outbreak_data)

datebin_and_agg() (in module outbreak_tools)

F

first_date() (in module outbreak_tools)

G

gather_groups() (in module outbreak_clustering) get_agg_prevalence() (in module outbreak_clustering) get_colors() (in module outbreak_tools) get_compressed_tree() (in module outbreak_clustering) get_lineage_key() (in module outbreak_clustering) get_riverplot_baseline() (in module outbreak_tools) get_tree() (in module outbreak_tools) get_wastewater_latest() (in module outbreak_data)

get_wastewater_lineages() (in module outbreak_data) get_wastewater_metadata() (in module outbreak_data) get_wastewater_mutations() (in module outbreak_data) get_wastewater_samples() (in module outbreak_data) get_wastewater_samples_by_lineage() (in module outbreak_data) get_wastewater_samples_by_mutation() (in module outbreak_data) get_ww_weights() (in module outbreak_tools) gr_significance() (in module outbreak_data) growth_rates() (in module outbreak_data)

K

known_mutations() (in module outbreak_data)

L

lineage_by_sub_admin() (in module outbreak_data)

lineage_cl_prevalence() (in module outbreak_data)

M

most_recent_cl_data() (in module outbreak_data)

mutation_details() (in module outbreak_data) mutation_prevalences() (in module outbreak_data)

S

sequence_counts() (in module outbreak_data)

W

wildcard_lineage() (in module outbreak_data)

wildcard_location() (in module outbreak_data)