Python Outbreak.info API
authenticate_new_user()
cases_by_location(location)
lineage_mutations(pango_lin, mutation, freq)
all_lineage_prevalences(location, startswith)
global_prevalence(pango_lin, mutations, cumulative, lineage_crumbs=False)
sequence_counts(location, cumulative, sub_admin)
mutations_by_lineage(mutation, location, pango_lin)
prevalence_by_location(pango_lin, location, mutations=None, datemin=None, datemax=None, cumulative=None, lineage_crumbs=False)
lineage_by_sub_admin(pango_lin, mutations, location, ndays=0, detected)
collection_date(pango_lin, mutations=None, location=None)
submission_date(pango_lin, mutations=None, location)
mutation_details(mutations)
daily_lag(location=None)
wildcard_lineage(name)
wildcard_location(name)
wildcard_mutations(name)
location_details(location)
get_outbreak_data()
growth_rates(lineage, location)
Epidemiological data analyses
Lineage Prevalence Analyses
Mutation Data Analyses
Dealing with Cryptic Variants
Python Outbreak.info API
Index
Index
A
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C
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D
|
G
|
L
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M
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P
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S
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W
A
all_lineage_prevalences() (in module outbreak_data)
authenticate_new_user() (in module authenticate_user)
C
cases_by_location() (in module outbreak_data)
collection_date() (in module outbreak_data)
D
daily_lag() (in module outbreak_data)
G
get_outbreak_data() (in module outbreak_data)
global_prevalence() (in module outbreak_data)
growth_rates() (in module outbreak_data)
L
lineage_by_sub_admin() (in module outbreak_data)
lineage_mutations() (in module outbreak_data)
location_details() (in module outbreak_data)
M
mutation_details() (in module outbreak_data)
mutations_by_lineage() (in module outbreak_data)
P
prevalence_by_location() (in module outbreak_data)
S
sequence_counts() (in module outbreak_data)
submission_date() (in module outbreak_data)
W
wildcard_lineage() (in module outbreak_data)
wildcard_location() (in module outbreak_data)
wildcard_mutations() (in module outbreak_data)