gr_significance

outbreak_data.gr_significance(location='Global', n=5)

Get the top lineages with the most significant growth behavior in a given location.

Parameters

• location -- List or string of location IDs.

• n -- Number of lineages to return.

Returns

A pandas dataframe of significant lineages.

Parameter example

{ 'location': ['USA', 'Global'] }

Example Usage

Find the tope 5 most significant lineages globally:

>>> df = outbreak_data.gr_significance(location='Global', n=5)
>>> df

  _id _score growing   leaf     loc                 sig  \
lin
JN.1.1    Global_JN.1.1   None    true   true  Global   170.5345544056284
JN.1.4    Global_JN.1.4   None    true   true  Global  148.67142485884114
JN.1.22  Global_JN.1.22   None    true   true  Global  125.34771448608038
JN.1+      Global_JN.1+   None    true  false  Global   115.0086253690486
JN.1.7    Global_JN.1.7   None    true   true  Global  103.52483890881427

                        snr
lin
JN.1.1   12.915667590790331
JN.1.4   12.041819797365195
JN.1.22  11.034042953153367
JN.1+    10.556798749279736
JN.1.7   10.000270940090726