get_wastewater_lineages ------------------------ .. autofunction:: outbreak_data.get_wastewater_lineages Note that this function is used in conjunction with get_wastewater_mutations. **Example Usage** Find lineages of samples associated with A --> G base mutations at genome position 1003:: # Collect wastewater mutation data >>> samples = outbreak_data.get_wastewater_samples_by_mutation(site=1003, alt_base='G', server='dev.outbreak.info') >>> outbreak_data.get_wastewater_lineages(samples, server='dev.outbreak.info') alt_base depth prevalence_x ref_base site \ mutation lineage 1003 AND alt_base:G CK.1.1.1 G 51 0.038088 A 1003 CL.1.3 G 51 0.038088 A 1003 DV.1.1 G 51 0.038088 A 1003 HW.1 G 51 0.038088 A 1003 XBJ.4 G 51 0.038088 A 1003 ... ... ... ... ... ... JR.1.1.1 G 23 0.273810 A 1003 JY.1.1 G 23 0.273810 A 1003 KE.3 G 23 0.273810 A 1003 KT.1.1 G 23 0.273810 A 1003 XBB.1.24 G 23 0.273810 A 1003 sra_accession query coverage \ mutation lineage 1003 AND alt_base:G CK.1.1.1 SRR21864715 SRR21864715 97.555429 CL.1.3 SRR21864715 SRR21864715 97.555429 DV.1.1 SRR21864715 SRR21864715 97.555429 HW.1 SRR21864715 SRR21864715 97.555429 XBJ.4 SRR21864715 SRR21864715 97.555429 ... ... ... ... JR.1.1.1 SRR25022780 SRR25022780 9.848510 JY.1.1 SRR25022780 SRR25022780 9.848510 KE.3 SRR25022780 SRR25022780 9.848510 KT.1.1 SRR25022780 SRR25022780 9.848510 XBB.1.24 SRR25022780 SRR25022780 9.848510 crumbs \ mutation lineage 1003 AND alt_base:G CK.1.1.1 ;B;B.1;B.1.1;B.1.1.529;B.1.1.529.5;B.1.1.529.5... CL.1.3 ;B;B.1;B.1.1;B.1.1.529;B.1.1.529.5;B.1.1.529.5... DV.1.1 ;B;B.1;B.1.1;B.1.1.529;B.1.1.529.2;B.1.1.529.2... HW.1 ;XBC;XBC.1;XBC.1.6;XBC.1.6.3;XBC.1.6.3.1;HW;HW.1; XBJ.4 ;XBJ;XBJ.4; ... ... JR.1.1.1 ;XBB;XBB.1;XBB.1.9;XBB.1.9.2;XBB.1.9.2.5;XBB.1... JY.1.1 ;XBB;XBB.2;XBB.2.3;XBB.2.3.19;XBB.2.3.19.1;XBB... KE.3 ;XBB;XBB.1;XBB.1.19;XBB.1.19.1;XBB.1.19.1.5;XB... KT.1.1 ;XBB;XBB.2;XBB.2.3;XBB.2.3.10;XBB.2.3.10.1;XBB... XBB.1.24 ;XBB;XBB.1;XBB.1.24; prevalence_y spike_coverage mutation lineage 1003 AND alt_base:G CK.1.1.1 0.000530 98.874935 CL.1.3 0.000550 98.874935 DV.1.1 0.000106 98.874935 HW.1 0.000220 98.874935 XBJ.4 0.000288 98.874935 ... ... ... JR.1.1.1 0.131121 3.218210 JY.1.1 0.100538 3.218210 KE.3 0.008403 3.218210 KT.1.1 0.238095 3.218210 XBB.1.24 0.018568 3.218210 [6085 rows x 11 columns]