Plots a dot plot of prevalences of a variant in a specific location

plotPrevalenceDotPlot(df, title = NULL, subtitle = NULL, dot_size = 3)

Arguments

df: Dataframe resulting from calling getCumulativeBySubadmin
title: (optional) Title to include on the plot
subtitle: (optional) Subtitle to include on the plot
dot_size: (optional) Dot plot size (in mm)

Value

Examples


# Calculate the proportion of sequences assigned to BA.2 or BA.2.12.1 by U.S. State
prev_by_state = getCumulativeBySubadmin(pangolin_lineage = c("BA.2", "BA.2.12.1"), location = "United States", ndays = 90)
#> Retrieving data... 

# Plot the results
plotPrevalenceDotPlot(prev_by_state, "Prevalence over the last 90 days in the United States", subtitle = paste0("As of ", format(Sys.Date(), '%d %B %Y')))
#> Warning: Removed 10 rows containing missing values (`geom_segment()`).